PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016511910.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 400aa    MW: 44849.8 Da    PI: 6.8305
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016511910.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B31016.8e-3247151199
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 
                     f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  +
  XP_016511910.1  47 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDTNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvGElGK 141
                     89****************************66677899*************************************************66699999 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l++ ++r+
  XP_016511910.1 142 NRLFIDWRRR 151
                     9999999997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-4139156IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.98E-3044153IPR015300DNA-binding pseudobarrel domain
CDDcd100173.27E-2645134No hitNo description
PfamPF023623.7E-2947151IPR003340B3 DNA binding domain
SMARTSM010191.2E-2247152IPR003340B3 DNA binding domain
PROSITE profilePS5086314.69247152IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MMDTPPTVNH CEGDTDEHHH SHHHNLVDLG VGATANSMAL IEREHMFDKV VTPSDVGKLN  60
RLVIPKQHAE KYFPLDSSSN EKGLLLNFED TNGKPWRFRY SYWNSSQSYV MTKGWSRFVK  120
EKKLDAGDIV SFQRGVGELG KNRLFIDWRR RPDAPTDHLH THFMTHVPLS QHFSNNFQYR  180
SNINHQYPAA WNHPLFLQPD HSPLHSRPAG SMSYQQQYSY SAYGIGNSLN YYDTTSNFNN  240
MASSRIVVNG NPCPSGSVVY LRTGSVAQVP QQEVGLMKQM QRGSSSSSIV GEGSDRLVEP  300
MVFDSVPVVQ GKAAPKRLRL FGVNMDCPVS DSDESCDMSS SSSSLPTTTY SHTPQFSTST  360
PSLQFRTFNN YDDAKPLQTA PTDEESSGKG KESMSLDLEI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A8e-484415711123DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6686470.0KF668647.1 Nicotiana benthamiana NGATHAa mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016511910.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
TrEMBLW6HWN60.0W6HWN6_NICBE; NGATHAa
STRINGPGSC0003DMT4000318631e-161(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28172350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.12e-70B3 family protein